getMAF: Compute minor allele frequencies

In wolfemd/genomicMateSelectR: Genomic Mate Selection

Compute minor allele frequencies

Description

get a vector of minor allele frequences from a dosage matrix

Usage

getMAF(M)

Arguments

M	dosage matrix. Assumes SNPs in M coded 0, 1, 2 (requires rounding dosages to integers). M is Nind x Mrow, numeric matrix, with row/columanes to indicate SNP/ind ID

Value

vector of minor allele frequencies, names = SNP IDs if in cols of M

See Also

Other helper: backsolveSNPeff(), centerDosage(), crosses2predict(), dose2domDevGenotypic(), dose2domDev(), effectsArray2list(), genmap2recombfreq(), genoVarCovarMatFunc(), getAF(), getPropHom(), intensity(), kinship(), maf_filter(), quadform(), remove_invariant()

wolfemd/genomicMateSelectR documentation built on July 1, 2022, 10:42 p.m.