ModelInterface: R6 interface class representing modelling result

In wolski/prolfqua: Proteomics Label Free Quantification

R6 interface class representing modelling result

Description

R6 interface class representing modelling result

R6 interface class representing modelling result

Methods

Public methods

• ModelInterface$get_coefficients()

• ModelInterface$get_anova()

• ModelInterface$coef_histogram()

• ModelInterface$coef_volcano()

• ModelInterface$coef_pairs()

• ModelInterface$anova_histogram()

• ModelInterface$clone()

---

Method get_coefficients()

return model coefficients

Usage

ModelInterface$get_coefficients()

Returns

data.frame

---

Method get_anova()

perform ANOVA analysis

Usage

ModelInterface$get_anova()

Returns

data.frame

---

Method coef_histogram()

plot histogram of coefficients

Usage

ModelInterface$coef_histogram()

Returns

ggplot

---

Method coef_volcano()

plot volcano of coefficients

Usage

ModelInterface$coef_volcano()

Returns

ggplot

---

Method coef_pairs()

pairs plot of coefficients

Usage

ModelInterface$coef_pairs()

Returns

ggplot

---

Method anova_histogram()

histogram of p-values and FDR for anova results

Usage

ModelInterface$anova_histogram()

Returns

ggplot

---

Method clone()

The objects of this class are cloneable with this method.

Usage

ModelInterface$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

mi <- ModelInterface$new()

testthat::expect_error(mi$get_coefficients())
testthat::expect_error(mi$get_anova())
testthat::expect_error(mi$coef_histogram())
testthat::expect_error(mi$coef_volcano())
testthat::expect_error(mi$coef_pairs())
testthat::expect_error(mi$anova_histogram())

wolski/prolfqua documentation built on Oct. 31, 2024, 9:22 a.m.