get_UniprotID_from_fasta_header: Extracts uniprot ID

In wolski/prolfqua: Proteomics Label Free Quantification

Extracts uniprot ID

Description

Extracts uniprot ID

Usage

get_UniprotID_from_fasta_header(df, idcolumn = "protein_Id")

Arguments

obj	data.frame
idcol	columns to extract uniprot id's from

Value

data.frame

See Also

Other utilities: INTERNAL_FUNCTIONS_BY_FAMILY, matrix_to_tibble(), multigroup_volcano(), names_to_matrix(), pairs_smooth(), pairs_w_abline(), panel_cor(), panel_hist(), remove_NA_rows(), table_facade()

Examples

bb <- prolfqua_data('data_ionstar')$filtered()
tmp <- prolfqua::separate_hierarchy(bb$data,old2new( bb$config))
tmp$UniprotID <- NULL
tmp <- get_UniprotID_from_fasta_header(tmp, idcolumn = "top_protein")
stopifnot("UniprotID" %in%  colnames(tmp))

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.