jackknife_matrix: Compute correlation matrix with jack

In wolski/prolfqua: Proteomics Label Free Quantification

Compute correlation matrix with jack

Description

Compute correlation matrix with jack

Usage

jackknife_matrix(dataX, distmethod, ...)

Arguments

dataX	data.frame with transition intensities per peptide
distmethod	dist or correlation method working with matrix i.e. cor
...	further parameters to method

Value

summarizes results producced with jackknife

See Also

jackknife

Other transitioncorrlation: cor_jackknife_matrix(), cor_order(), jackknife()

Examples

dataX <- matrix(rnorm(20), ncol=4)
rownames(dataX)<- paste("R",seq_len(nrow(dataX)),sep="")
colnames(dataX)<- paste("C",seq_len(ncol(dataX)),sep="")
tmp <- jackknife(dataX, cor, use="pairwise.complete.obs", method="pearson")
res <- jackknife_matrix(dataX, cor)
res
stopifnot(dim(res) == c(4,4))
res <- jackknife_matrix(dataX, cor, method="spearman")
stopifnot(dim(res) == c(4,4))

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.