linfct_all_possible_contrasts: create all possible contrasts

In wolski/prolfqua: Proteomics Label Free Quantification

create all possible contrasts

Description

create all possible contrasts

Usage

linfct_all_possible_contrasts(lin_int)

See Also

Other modelling: Contrasts, ContrastsMissing, ContrastsModerated, ContrastsPlotter, ContrastsProDA, ContrastsROPECA, ContrastsTable, INTERNAL_FUNCTIONS_BY_FAMILY, LR_test(), Model, build_model(), contrasts_fisher_exact(), get_anova_df(), get_complete_model_fit(), get_p_values_pbeta(), isSingular_lm(), linfct_factors_contrasts(), linfct_from_model(), linfct_matrix_contrasts(), merge_contrasts_results(), model_analyse(), model_summary(), moderated_p_limma(), moderated_p_limma_long(), my_contest(), my_contrast(), my_contrast_V1(), my_contrast_V2(), my_glht(), pivot_model_contrasts_2_Wide(), plot_lmer_peptide_predictions(), sim_build_models_lm(), sim_build_models_lmer(), sim_make_model_lm(), sim_make_model_lmer(), strategy_lmer(), summary_ROPECA_median_p.scaled()

Examples

m <- sim_make_model_lm( "interaction")
linfct <- linfct_from_model(m)
xl <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_factors)
xx <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_interactions)
m <- sim_make_model_lm( "factor")
linfct <- linfct_from_model(m)
xl <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_factors)
xx <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_interactions)
m <- sim_make_model_lm( "parallel2")
linfct <- linfct_from_model(m)
xl <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_factors)
stopifnot(all(xl == c(0,-1)))
xx <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_interactions)
stopifnot(all(xx == c(0,-1)))

m <- sim_make_model_lm( "parallel3")
linfct <- linfct_from_model(m)
xl <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_factors)
stopifnot(all(xl == c(0,0,0,-1,0,1,0,-1,-1)))
xx <- prolfqua::linfct_all_possible_contrasts(linfct$linfct_interactions)
stopifnot(all(xl == c(0,0,0,-1,0,1,0,-1,-1)))

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.