make_reduced_hierarchy_config: Make reduced hierarchy configuration

In wolski/prolfqua: Proteomics Label Free Quantification

Make reduced hierarchy configuration

Description

Make reduced hierarchy configuration

Usage

make_reduced_hierarchy_config(config, workIntensity, hierarchy)

Arguments

config	AnalysisConfiguration
workIntensity	work intensity column
hierarchy	new reduced hierarchy

Value

AnalysisConfiguration with reduced hieararchy

See Also

Other configuration: AnalysisConfiguration, AnalysisParameters, AnalysisTableAnnotation, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), concrete_AnalysisConfiguration, make_interaction_column(), sample_subset(), separate_factors(), separate_hierarchy(), setup_analysis(), spread_response_by_IsotopeLabel(), table_factors()

Examples

bb <- prolfqua_data('data_ionstar')$filtered()
bb$config <- old2new(bb$config)
stopifnot(nrow(bb$data) == 25780)
conf <- bb$config$clone(deep=TRUE)
analysis <- bb$data

make_reduced_hierarchy_config(conf,
 "testintensity",
 conf$table$hierarchy[1:2])

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.