medpolish_estimate: Median polish estimate of e.g. protein from peptide...

In wolski/prolfqua: Proteomics Label Free Quantification

Median polish estimate of e.g. protein from peptide intensities

Description

Compute Tukey's median polish estimate of a protein from peptide or precursor intensities

Usage

medpolish_estimate(x, name = FALSE, sampleName = "sampleName")

Arguments

x	a matrix
name	if TRUE returns the name of the summary column

Value

data.frame with number of rows equal to number of columns of input matrix.

See Also

Other aggregation: INTERNAL_FUNCTIONS_BY_FAMILY, aggregate_intensity_topN(), estimate_intensity(), intensity_summary_by_hkeys(), medpolish_estimate_df(), medpolish_estimate_dfconfig(), medpolish_protein_estimates(), plot_estimate(), plot_hierarchies_add_quantline(), plot_hierarchies_line(), plot_hierarchies_line_df(), rlm_estimate(), rlm_estimate_dfconfig()

Examples

medpolish_estimate(name = TRUE)
gg <- matrix(runif(20),4,5)
rownames(gg) <- paste0("A",1:4)
colnames(gg) <- make.names(1:5)
gg
mx <- medpolish_estimate(gg)

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.