medpolish_protein_estimates: median polish from normalized peptide intensities

In wolski/prolfqua: Proteomics Label Free Quantification

median polish from normalized peptide intensities

Description

median polish from normalized peptide intensities

Usage

medpolish_protein_estimates(data, config)

See Also

Other aggregation: INTERNAL_FUNCTIONS_BY_FAMILY, aggregate_intensity_topN(), estimate_intensity(), intensity_summary_by_hkeys(), medpolish_estimate(), medpolish_estimate_df(), medpolish_estimate_dfconfig(), plot_estimate(), plot_hierarchies_add_quantline(), plot_hierarchies_line(), plot_hierarchies_line_df(), rlm_estimate(), rlm_estimate_dfconfig()

Other deprecated: INTERNAL_FUNCTIONS_BY_FAMILY, intensity_summary_by_hkeys()

Examples

istar <- prolfqua_data('data_ionstar')$normalized()
istar$config <- old2new(istar$config)
istar_data <- istar$data
res <- medpolish_protein_estimates(istar_data,
istar$config )

dr <- res("unnest")$data
stopifnot(nrow(dr) ==
length(unique(istar$data$protein_Id )) * length(unique(istar$data$raw.file)))

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.