my_contrast: compute contrasts for full models

In wolski/prolfqua: Proteomics Label Free Quantification

compute contrasts for full models

Description

compute contrasts for full models

Usage

my_contrast(
  m,
  linfct,
  coef = coefficients(m),
  Sigma.hat = vcov(m),
  confint = 0.95
)

Arguments

m	linear model generated using lm
linfct	linear function
coef	use default
confint	which confidence interval to determine
use	default

See Also

Other modelling: Contrasts, ContrastsMissing, ContrastsModerated, ContrastsPlotter, ContrastsProDA, ContrastsROPECA, ContrastsTable, INTERNAL_FUNCTIONS_BY_FAMILY, LR_test(), Model, build_model(), contrasts_fisher_exact(), get_anova_df(), get_complete_model_fit(), get_p_values_pbeta(), isSingular_lm(), linfct_all_possible_contrasts(), linfct_factors_contrasts(), linfct_from_model(), linfct_matrix_contrasts(), merge_contrasts_results(), model_analyse(), model_summary(), moderated_p_limma(), moderated_p_limma_long(), my_contest(), my_contrast_V1(), my_contrast_V2(), my_glht(), pivot_model_contrasts_2_Wide(), plot_lmer_peptide_predictions(), sim_build_models_lm(), sim_build_models_lmer(), sim_make_model_lm(), sim_make_model_lmer(), strategy_lmer(), summary_ROPECA_median_p.scaled()

Examples

m <-  sim_make_model_lm( "factors")
linfct <- linfct_from_model(m)$linfct_factors
my_glht(m, linfct)
my_contrast(m, linfct, confint = 0.95)
my_contrast(m, linfct, confint = 0.99)

wolski/prolfqua documentation built on Oct. 31, 2024, 9:22 a.m.