my_contrast_V1: handles incomplete models by setting coefficients to 0

In wolski/prolfqua: Proteomics Label Free Quantification

handles incomplete models by setting coefficients to 0

Description

handles incomplete models by setting coefficients to 0

Usage

my_contrast_V1(incomplete, linfct, confint = 0.95)

Arguments

linfct	linear function
confint	confidence interval default 0.95
m	linear model generated using lm

See Also

Other modelling: Contrasts, ContrastsMissing, ContrastsModerated, ContrastsPlotter, ContrastsProDA, ContrastsROPECA, ContrastsTable, INTERNAL_FUNCTIONS_BY_FAMILY, LR_test(), Model, build_model(), build_models(), contrasts_fisher_exact(), get_anova_df(), get_complete_model_fit(), get_p_values_pbeta(), isSingular_lm(), linfct_all_possible_contrasts(), linfct_factors_contrasts(), linfct_from_model(), linfct_matrix_contrasts(), make_model(), merge_contrasts_results(), model_analyse(), model_summary(), moderated_p_limma(), moderated_p_limma_long(), my_contest(), my_contrast(), my_contrast_V2(), my_glht(), pivot_model_contrasts_2_Wide(), plot_lmer_model_and_data(), plot_lmer_peptide_noRandom(), plot_lmer_peptide_predictions(), plot_lmer_predicted_interactions(), strategy_lmer(), summary_ROPECA_median_p.scaled()

Examples

m <- make_model( "factors")
linfct <- linfct_from_model(m)$linfct_factors
my_contrast_V1(m, linfct, confint = 0.95)
my_contrast_V1(m, linfct, confint = 0.99)

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.