nr_obs_sample: Aggregates e.g. protein abundances from peptide abundances

In wolski/prolfqua: Proteomics Label Free Quantification

Aggregates e.g. protein abundances from peptide abundances

Description

Aggregates e.g. protein abundances from peptide abundances

Usage

nr_obs_sample(data, config, new_child = config$table$nr_children)

Examples

dd <- prolfqua::sim_lfq_data_peptide_config()
dd$data <- na.omit(dd$data)

xd <- nr_obs_sample(dd$data, dd$config)
xd$nr_children |> table()
# xd |> pivot_wider(id_cols = protein_Id, names_from = sample, values_from = nr_children)

dp <- prolfqua::sim_lfq_data_protein_config()
xp <- nr_obs_sample(dp$data, dp$config)
# xp
# xp |> pivot_wider(id_cols = protein_Id, names_from = sample, values_from = nr_peptides)
xp$nr_peptides |> table()

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.