plot_NA_heatmap: plot heatmap of NA values

In wolski/prolfqua: Proteomics Label Free Quantification

plot heatmap of NA values

Description

plot heatmap of NA values

Usage

plot_NA_heatmap(data, config, limitrows = 10000, distance = "binary")

See Also

Other plotting: ContrastsPlotter, INTERNAL_FUNCTIONS_BY_FAMILY, UpSet_interaction_missing_stats(), UpSet_missing_stats(), medpolish_estimate_df(), missigness_histogram(), missingness_per_condition(), missingness_per_condition_cumsum(), plot_estimate(), plot_heatmap(), plot_heatmap_cor(), plot_hierarchies_add_quantline(), plot_hierarchies_boxplot_df(), plot_hierarchies_line(), plot_hierarchies_line_df(), plot_intensity_distribution_violin(), plot_pca(), plot_raster(), plot_sample_correlation(), plot_screeplot()

Examples

istar <- sim_lfq_data_peptide_config()
config <- istar$config
analysis <- istar$data


tmp <- plot_NA_heatmap(analysis, config)
stopifnot(class(tmp) == "pheatmap")
tmp <- plot_NA_heatmap(analysis, config, distance = "euclidean")
stopifnot(class(tmp) == "pheatmap")

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.