plot_screeplot: plot screeplot

In wolski/prolfqua: Proteomics Label Free Quantification

plot screeplot

Description

plot screeplot

Usage

plot_screeplot(data, config, threshold_pc = 1, nr_PC = NULL)

See Also

Other plotting: ContrastsPlotter, INTERNAL_FUNCTIONS_BY_FAMILY, UpSet_interaction_missing_stats(), UpSet_missing_stats(), medpolish_estimate_df(), missigness_histogram(), missingness_per_condition(), missingness_per_condition_cumsum(), plot_NA_heatmap(), plot_estimate(), plot_heatmap(), plot_heatmap_cor(), plot_hierarchies_add_quantline(), plot_hierarchies_boxplot_df(), plot_hierarchies_line(), plot_hierarchies_line_df(), plot_intensity_distribution_violin(), plot_pca(), plot_raster(), plot_sample_correlation()

Examples

istar <- sim_lfq_data_protein_config(with_missing = FALSE)
config <- istar$config
analysis <- istar$data
tmp <- plot_screeplot(analysis, config, threshold_pc= NULL)
print(tmp)
tmp <- plot_screeplot(analysis, config, threshold_pc= 1)
print(tmp)
tmp <- plot_screeplot(analysis, config, nr_PC = 4, threshold_pc = NULL)
print(tmp)

wolski/prolfqua documentation built on Oct. 31, 2024, 9:22 a.m.