plot_stat_density_median: plot density distribution or ecdf of sd, mean or cv given...

In wolski/prolfqua: Proteomics Label Free Quantification

plot density distribution or ecdf of sd, mean or cv given intensity below and above median

Description

plot density distribution or ecdf of sd, mean or cv given intensity below and above median

Usage

plot_stat_density_median(
  pdata,
  config,
  stat = c("CV", "meanAbundance", "sd"),
  ggstat = c("density", "ecdf")
)

Arguments

pdata	data.frame
config	AnalysisConfiguration
stat	sd, mean or CV
ggstat	either density of ecdf

See Also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density(), plot_stat_violin(), plot_stat_violin_median(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples

bb1 <- prolfqua::sim_lfq_data_peptide_config()
config <- bb1$config
data2 <- bb1$data
res <- summarize_stats(data2, config)
plot_stat_density_median(res, config, "CV")
plot_stat_density_median(res, config, "meanAbundance")
plot_stat_density_median(res, config, "sd")

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.