rank_peptide_by_intensity: ranks precursor - peptide by intensity.
In wolski/prolfqua: Proteomics Label Free Quantification

View source: R/tidyMS_R6_TransitionCorrelations.R

rank_peptide_by_intensity

R Documentation

ranks precursor - peptide by intensity.

Description

ranks precursor - peptide by intensity.

Usage

rank_peptide_by_intensity(pdata, config)

Arguments

`pdata`	data.frame
`config`	AnalysisConfiguration

Value

data.frame

Examples



bb <- prolfqua::sim_lfq_data_peptide_config()
res <- remove_large_QValues(bb$data, bb$config)
res <- rank_peptide_by_intensity(res,bb$config)
X <-res |> dplyr::select(c(bb$config$table$hierarchy_keys(),
 srm_meanInt, srm_meanIntRank)) |> dplyr::distinct()
X |> dplyr::arrange(!!!rlang::syms(c(bb$config$table$hierarchy_keys()[1], "srm_meanIntRank"  )))

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.