render_MQSummary_rmd: render MQ Summary.

In wolski/prolfqua: Proteomics Label Free Quantification

render MQ Summary.

Description

render MQ Summary.

Usage

render_MQSummary_rmd(
  pdata,
  config,
  project_conf,
  pep = TRUE,
  dest_path = ".",
  dest_file_name = "QCandSampleSize.Rmd",
  workdir = tempdir(),
  format = c("pdf", "html"),
  markdown_path = c("doc/QCandSampleSize.Rmd")
)

Arguments

pdata	data.frame
config	AnalysisConfiguration
pep	are these peptide or protein data
dest_path	destination path
dest_file_name	name of pdf file
workdir	working directory
format	either pdf or html
project_config	list with workunit_Id project_Id order_Id

See Also

Other vignetteHelpers: INTERNAL_FUNCTIONS_BY_FAMILY

Examples

bb <- prolfqua_data('data_skylinePRMSample_A')
config <- bb$config_f()
analysis <- bb$analysis(bb$data, bb$config_f())
projectConfig <- list(workunit_Id = "xx", project_Id = "xy", order_Id = "z")
if(FALSE){
render_MQSummary_rmd(analysis,
  config ,
  projectConfig,
  workdir= tempdir()) # tempdir(check = FALSE))
}

wolski/prolfqua documentation built on May 12, 2024, 10:16 p.m.