View source: R/AnalysisConfiguration.R
setup_analysis | R Documentation |
AnalysisConfiguration
Extracts columns relevant for a configuration from a data frame and create new columns e.g. sampleName column etc.
setup_analysis(data, configuration, cc = TRUE, from_factors = FALSE)
data |
data.frame |
cc |
complete cases default TRUE |
config |
AnlalysisConfiguration |
Other configuration:
AnalysisConfiguration
,
AnalysisParameters
,
AnalysisTableAnnotation
,
INTERNAL_FUNCTIONS_BY_FAMILY
,
R6_extract_values()
,
complete_cases()
,
concrete_AnalysisConfiguration
,
make_interaction_column()
,
make_reduced_hierarchy_config()
,
sample_subset()
,
separate_factors()
,
separate_hierarchy()
,
spread_response_by_IsotopeLabel()
,
table_factors()
,
table_factors_size()
skylineconfig <- create_config_Skyline(isotopeLabel = "Isotope.Label.Type",
ident_qValue = "Detection.Q.Value")
skylineconfig$table$factors[["Time"]] = "Sampling.Time.Point"
sample_analysis <- setup_analysis(prolfqua_data('data_skylinePRMSample_A')$data, skylineconfig)
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