transform_work_intensity: Transform intensity

In wolski/prolfqua: Proteomics Label Free Quantification

Transform intensity

Description

Transform intensity

Usage

transform_work_intensity(
  pdata,
  config,
  .func,
  .funcname = NULL,
  intesityNewName = NULL,
  deep = FALSE
)

Arguments

pdata	data.frame
config	AnalysisConfiguration
.func	function to transform intensities e.g. log2
.funcname	generates new name from name of transformation and old working intensity column name.
intesityNewName	column name for new intensity, default NULL

Value

data.frame

Examples

dd <- prolfqua_data('data_spectronautDIA250_A')
config <- dd$config_f()
analysis <- dd$analysis(dd$data,config)
x <- transform_work_intensity(analysis, config, .func = log2)
stopifnot("log2_FG.Quantity" %in% colnames(x))
config <- dd$config_f()
x <- transform_work_intensity(analysis, config, .func = asinh)
stopifnot("asinh_FG.Quantity" %in% colnames(x))

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.