Files in xia-lab/OptiLCMS
Optimized LC-MS Spectra Processing
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/C_function.R
R/Global_setting.R
R/OptiLCMS_Class.R
R/Optimize_params.R
R/Other_Utils.R
R/Params_db.R
R/Perform_functions.R
R/ROI_Extraction.R
R/Resume_functions.R
R/Spectra_Utils.R
R/Spectra_import.R
R/Spectra_visulization.R
README.md
data/mSet.rda
inst/CITATION
inst/lists/ions.csv
inst/lists/neutraladdition.csv
inst/lists/neutralloss.csv
inst/rules/extended_adducts_neg.csv
inst/rules/extended_adducts_pos.csv
inst/rules/primary_adducts_neg.csv
inst/rules/primary_adducts_pos.csv
inst/script/Example_Running_Script.R
man/CentroidCheck.Rd
man/CentroidMSData.Rd
man/ExecutePlan.Rd
man/Export.Annotation.Rd
man/Export.PeakSummary.Rd
man/Export.PeakTable.Rd
man/FormatPeakList.Rd
man/GaussModel.Rd
man/ImportRawMSData.Rd
man/InitDataObjects.Rd
man/InitializaPlan.Rd
man/OptiLCMS.Rd
man/PerformDataInspect.Rd
man/PerformDataTrimming.Rd
man/PerformParamsOptimization.Rd
man/PerformPeakAlignment.Rd
man/PerformPeakAnnotation.Rd
man/PerformPeakFiling.Rd
man/PerformPeakPicking.Rd
man/PerformPeakProfiling.Rd
man/PerformROIExtraction.Rd
man/PlotSpectraBPIadj.Rd
man/PlotSpectraInsensityStistics.Rd
man/PlotSpectraPCA.Rd
man/PlotSpectraRTadj.Rd
man/PlotXIC.Rd
man/SetAnnotationParam.Rd
man/SetGlobalParallel.Rd
man/SetPeakParam.Rd
man/SetPlotParam.Rd
man/UpdateRawfiles.Rd
man/mSet.Rd
man/plotBPIs.Rd
man/plotMSfeature.Rd
man/plotSingleTIC.Rd
man/plotTICs.Rd
man/running.plan.Rd
man/updateRawSpectraPath.Rd
src/Makevars
src/Makevars.win
src/decorana.f
src/fastMatch.c
src/fastMatch.h
src/init.c
src/massifquant/DataKeeper.cpp
src/massifquant/DataKeeper.h
src/massifquant/OpOverload.cpp
src/massifquant/OpOverload.h
src/massifquant/SegProc.cpp
src/massifquant/SegProc.h
src/massifquant/TrMgr.cpp
src/massifquant/TrMgr.h
src/massifquant/Tracker.cpp
src/massifquant/Tracker.h
src/massifquant/dpq.h
src/massifquant/nmath.h
src/massifquant/xcms_massifquant.cpp
src/mzROI.c
src/obiwarp/lmat.h
src/obiwarp/mat.cpp
src/obiwarp/mat.h
src/obiwarp/vec.cpp
src/obiwarp/vec.h
src/obiwarp/xcms_dynprog.cpp
src/obiwarp/xcms_dynprog.h
src/obiwarp/xcms_lmat.cpp
src/util.c
src/util.h
src/xcms_binners.c
src/xcms_binners.h
src/xcms_obiwarp.cpp
vignettes/OptiLCMS_MS1.Rmd
