plotSingleTIC: plotSingleTIC

In xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing

plotSingleTIC

Description

plotSingleTIC is used to plot the TIC of a certain spectra

Usage

plotSingleTIC(
  mSet = NULL,
  filename,
  imagename,
  dpi = 72,
  width = 7,
  format = "png"
)

Arguments

mSet	mSet Object, should be processed by ImportMSData.
filename	Character, to give the filename for the TIC plotting.
imagename	Character, to give the filename of the TIC plotted. (only works for web version)
dpi	Numeric, dpi of the figure (default is 72, usually set it as 72, 144, 360)
width	Numeric, width of the figure (default is 7, usually set it as 6~12)
format	Character, format of the figure (default is 'png', usually can be 'png', 'pdf','tiff','svg','eps','jpg')

Value

will return a figure of a single TIC

Examples

data(mSet);
newPath <- dir(system.file("mzData", package = "mtbls2"),
               full.names = TRUE, recursive = TRUE)[c(10, 11, 12)]
mSet <- updateRawSpectraPath(mSet, newPath);
plotSingleTIC(mSet, "MSpos-Ex2-Col0-48h-Ag-2_1-A,3_01_9829.mzData", 
              "MSpos-Ex2-Col0-48h-Ag-2_1-A,3_01_9829.png")

xia-lab/OptiLCMS documentation built on March 27, 2024, 11:11 a.m.