plotMSfeature: plotMSfeature

In xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing

plotMSfeature

Description

plotMSfeature is used to plot the feature intensity of different groups

Usage

plotMSfeature(mSet = NULL, FeatureNM = 1, dpi = 72, format = "png", width = NA)

Arguments

mSet	mSet Object, should be processed aby 'PerformPeakProfiling'.
FeatureNM	Numeric, feature number in the feature table.
dpi	Numeric, to define the dpi of the figures. Default is 72. (only works for web version)
format	Character, to give the format of BPI figures ploted. Can be "jpeg", "png", "pdf", "svg", "tiff" or "ps". Default is "png". (only works for web version)
width	Numeric, width of the figure (default is NA, usually set it as 6~12)

Value

will return a figure of ms stats

Examples

data(mSet);
newPath <- dir(system.file("mzData", package = "mtbls2"),
               full.names = TRUE, recursive = TRUE)[c(10, 11, 12)]
mSet <- updateRawSpectraPath(mSet, newPath);
plotMSfeature (mSet, 1); # Here is only one group

xia-lab/OptiLCMS documentation built on Nov. 26, 2024, 3:50 a.m.