plotBPIs: plotBPIs

In xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing

Description

plotBPIs is used to plot the BPI of all files

Usage

plotBPIs(mSet = NULL, imgName, format = "png", dpi = 72, width = NA)

Arguments

mSet	mSet Object, should be processed by ImportMSData.
imgName	Character, to give the filename for the TIC plotting.
format	Character, to give the format of BPI figures ploted. Can be "jpeg", "png", "pdf", "svg", "tiff" or "ps". Default is "png". (only works for web version)
dpi	Numeric, to define the dpi of the figures. Default is 72. (only works for web version)
width	Numeric, width of the figure (default is NA, usually set it as 6~12)

Value

will return a figure of BPIs

Examples

newPath <- dir(system.file("mzData", package = "mtbls2"), 
full.names = TRUE, recursive = TRUE)[c(10:12)]
data(mSet)
mSet <- updateRawSpectraPath(mSet, newPath)
plotBPIs(mSet)

xia-lab/OptiLCMS documentation built on Sept. 6, 2021, 12:36 a.m.