Export.Annotation: Export.Annotation
In xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing

Description Usage Arguments Value Author(s) See Also Examples

Export.Annotation is used to export the result of annotation

1	Export.Annotation(mSet = NULL, path = getwd())

`mSet`	mSet object, processed by FormatPeakList.
`path`	character, used to specify the path for result rds and csv file. Default is the working directory.

will save annotated_peaklist.rds and annotated_peaklist.csv into working path

Zhiqiang Pang zhiqiang.pang@mail.mcgill.ca, Jeff Xia jeff.xia@mcgill.ca

ExecutePlan and PerformPeakProfiling for the whole pipeline.

data(mSet)
Export.Annotation(mSet, path = tempdir())
# delete the exported files from the tempdir with unlink
unlink(paste0(tempdir(),"/annotated_peaklist.csv"), recursive = TRUE, force = TRUE);
unlink(paste0(tempdir(),"/annotated_peaklist.rds"), recursive = TRUE, force = TRUE)