Files in xinchoubiology/Rcppsva

Rcpp Integration Surrogate Variable Analysis

R/AllClasses.R R/AllGenerics.R R/ComBat.R R/RcppExports.R R/Rcppsva-package.R R/bumphunter.R R/clustering.R R/combp.R R/dendrogram.R R/get450K.R R/iSVA.R R/misc.R R/optimization-methods.R R/plot-methods.R R/print-methods.R R/smooth.R R/zzz.R README.md demo/example_pipe.R demo/serverpip_I.R demo/serverpip_II.R history.md inst/extdata/Module_A.r inst/extdata/Module_B.r man/Beta.NA.Rd man/ComBat.Rd man/Dbpmerge.Rd man/Eigenbeta.Rd man/HClust.Rd man/Index.NA.Rd man/List2Index.Rd man/Rcppsva.Rd man/arma_eigen.Rd man/average_linkage.Rd man/beta_regress.Rd man/bootstrap.fit.Rd man/bootstrap_regress.Rd man/bumphuntingEngine.Rd man/bumps-class.Rd man/clique_merge.Rd man/clusterMaker.Rd man/combine.pvalue.Rd man/complete_linkage.Rd man/corrclusterMaker.Rd man/dendro.data.Rd man/dendrogram.Rd man/distance_kinds.Rd man/distributeRef.Rd man/estDimRMT.Rd man/gapStat.Rd man/get.bumps-methods.Rd man/get450Ksheet.Rd man/get450Kurl.Rd man/get450Kzip.Rd man/getTCGAssemble.Rd man/hclust_from_data.Rd man/int.eprior.Rd man/int_eprior.Rd man/isvaFn.Rd man/linkage_kinds.Rd man/memberDend.Rd man/memberLimit.Rd man/midDend.Rd man/mlm.fit.Rd man/mlm.tstat.Rd man/moduleSearch.Rd man/optimModule.Rd man/plot.Rd man/preProcess450K.Rd man/preProcessDMR.Rd man/print.Rd man/pvalue.Rd man/rankm.Rd man/regionSeeker.Rd man/segmentsCluster.Rd man/segmentsMaker.Rd man/show-methods.Rd man/single_linkage.Rd man/smoother.Rd man/stouffer_liptak.combp.Rd man/svaReg.Rd man/theme_dendro.Rd man/wilcox.fit.Rd man/zscore.combp.Rd test/testthat.R