prefilterGenes: Pre-filtering genes with low abundancy

Description Usage Arguments Value

Description

Pre-filtering genes with low abundancy

Usage

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prefilterGenes(object, pergroup = TRUE, min.expression = 5, min.cells = 2,
  min.samples = 1, ...)

Arguments

object

A sincera object

pergroup

If TRUE, the prefiltering will be based on genes' per sample abundancy; otherwise, it will be based on genes' abundancy in all cells

min.expression

The threshold value of gene expression

min.cells

The minimum number of cells

min.samples

The selected genes must pass the abundancy criteria in at least \"min.samples\" samples

Value

An update sincera object with prefiltered genes removed


xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.