yannchristinat/oncoscanR: Secondary analyses of CNV data (HRD and more)
The software uses the copy number segments from a text file and identifies all chromosome arms that are globally altered and computes various genome-wide scores. The following HRD scores (characteristic of BRCA-mutated cancers) are included: LST, HR-LOH, nLST and gLOH. the package is tailored for the ThermoFisher Oncoscan assay analyzed with their Chromosome Alteration Suite (ChAS) but can be adapted to any input.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | CopyNumberVariation Microarray Software |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.5.0 |
| URL | https://github.com/yannchristinat/oncoscanR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
