prune_by_size | R Documentation |
Remove segments smaller than the kit resolution.
prune_by_size(segments, threshold = 300)
segments |
A |
threshold |
Number indicating the minimum segment size to be kept (in kilobases). Defaults to the Oncoscan assay resolution outside of cancer genes: 300Kb. |
A GRanges
object containing the cleaned segments, their copy
number and copy number types.
segs.300k <- prune_by_size(segs.chas_example)
segs.50k <- prune_by_size(segs.chas_example, 50)
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