score_estwgd | R Documentation |
Estimates the number of whole-genome doubling events (WGD).
score_estwgd(segments, kit.coverage)
segments |
A |
kit.coverage |
A |
Based on the publication from Carter et al. (Nature Biotechnology
2012; PubMed ID: 22544022).
On a pan-cancer cohort, they observed that tumors that underwent one
whole-genome doubling event had a ploidy (average copy number) between 2.2
and 3.4. This function relies on the function score_avgcn
to compute
the ploidy.
A named list with two values: WGD (whole-genome doubling events) and avgCN (the average copy number). WGD values are 0 for no WGD event, 1 for one WGD event, 2 for several WGD events.
score_estwgd(segs.chas_example, oncoscan_na33.cov)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.