segs.chas_example: Expected segments from loading the ChAS file...
In yannchristinat/oncoscanR: Secondary analyses of CNV data (HRD and more)
segs.chas_example R Documentation
Expected segments from loading the ChAS file 'chas_example.txt'.
Description
Expected segments from loading the ChAS file 'chas_example.txt'.
Usage
segs.chas_example
Format
A GRanges object containing the segments, their copy number
(field cn) and their copy number types (field cn.type).
Source
segs.filename <- system.file('extdata', 'chas_example.txt',
package = 'oncoscanR')
mykit.cov <- get_oncoscan_coverage_from_probes()
segs.chas_example <- load_chas(segs.filename, kit.coverage = mykit.cov)
yannchristinat/oncoscanR documentation built on Oct. 27, 2023, 11:19 p.m.
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| segs.chas_example | R Documentation |
Expected segments from loading the ChAS file 'chas_example.txt'.
Description
Expected segments from loading the ChAS file 'chas_example.txt'.
Usage
segs.chas_example
Format
A GRanges object containing the segments, their copy number
(field cn) and their copy number types (field cn.type).
Source
segs.filename <- system.file('extdata', 'chas_example.txt', package = 'oncoscanR') mykit.cov <- get_oncoscan_coverage_from_probes() segs.chas_example <- load_chas(segs.filename, kit.coverage = mykit.cov)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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