oncoscanR-package: oncoscanR: an R package to perform secondary analysis of Copy...
In yannchristinat/oncoscanR: Secondary analyses of CNV data (HRD and more)
oncoscanR-package R Documentation
oncoscanR: an R package to perform secondary analysis of Copy Number
Variation data.
Description
Allows computation of different homologous recombination deficiency (HRD)
scores to identify PARP inhibitors responders. The package also allows for
computation of the tandem duplication plus score (TDplus; hallmark of
CDK12-mutated tumors) and the identification of arm-level alterations (e.g.
gain of chromosome arm 1p).
Details
The package is tailored for the ThermoFisher Oncoscan assay analyzed with
their Chromosome Alteration Suite (ChAS) but can be adapted to any input.
To learn more about oncoscanR, see the vignette using
browseVignettes(package = "oncoscanR").
Author(s)
Maintainer: Yann Christinat yann.christinat@hcuge.ch
Authors:
Geneva University Hospitals [copyright holder]
See Also
Useful links:
yannchristinat/oncoscanR documentation built on Oct. 27, 2023, 11:19 p.m.
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| oncoscanR-package | R Documentation |
oncoscanR: an R package to perform secondary analysis of Copy Number Variation data.
Description
Allows computation of different homologous recombination deficiency (HRD) scores to identify PARP inhibitors responders. The package also allows for computation of the tandem duplication plus score (TDplus; hallmark of CDK12-mutated tumors) and the identification of arm-level alterations (e.g. gain of chromosome arm 1p).
Details
The package is tailored for the ThermoFisher Oncoscan assay analyzed with their Chromosome Alteration Suite (ChAS) but can be adapted to any input.
To learn more about oncoscanR, see the vignette using
browseVignettes(package = "oncoscanR").
Author(s)
Maintainer: Yann Christinat yann.christinat@hcuge.ch
Authors:
Geneva University Hospitals [copyright holder]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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