adjust_loh | R Documentation |
Trim LOH segments with respect to loss segments.
adjust_loh(segments)
segments |
A |
LOH segments completely contained within (or equal to) a copy loss segment are deleted. LOH segments partially overlapping (on one end only) with a copy loss segment are trimmed to remove the overlap or split into several segments.
A GRanges
object containing the cleaned segments, their copy
number and copy number types.
segs.adj <- adjust_loh(segs.chas_example)
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