cntypes: Accepted types of CN for the segments - 'Gain': 1-2 extra...

In yannchristinat/oncoscanR: Secondary analyses of CNV data (HRD and more)

Accepted types of CN for the segments - 'Gain': 1-2 extra copies - 'Weak amplification': 3-7 extra copies - 'Strong amplification': 8 or more extra copies - 'Heterozygote loss': Loss of one copy out of two - 'Homozygote loss': Loss of all copies - 'LOH': copy-neutral loss of one parental allele

Description

Accepted types of CN for the segments - 'Gain': 1-2 extra copies - 'Weak amplification': 3-7 extra copies - 'Strong amplification': 8 or more extra copies - 'Heterozygote loss': Loss of one copy out of two - 'Homozygote loss': Loss of all copies - 'LOH': copy-neutral loss of one parental allele

Usage

cntypes

Format

A list of strings containing all CN types

Source

cntypes <- list(LOH='LOH', Gain='Gain', Loss='Loss')

yannchristinat/oncoscanR documentation built on Oct. 26, 2024, 12:58 p.m.