edge.diss: Edge set dissimilarity

In zdk123/SpiecEasi: Sparse Inverse Covariance for Ecological Statistical Inference

Edge set dissimilarity

Description

Compute the dissimilarity between the edge sets of two networks via:

1. maximum overlap: |x y| / max{|x|,|y|}

2. jaccard index (default): |x y|/(|x U y|)

Input networks do not have to have the same node sets.

Usage

edge.diss(x, y, metric = "jaccard", otux = NULL, otuy = NULL)

Arguments

x	pxp adjacency matrix (Matrix::sparseMatrix class)
y	other qxq adjacency matrix (Matrix::sparseMatrix class)
metric	'jaccard' or 'max'
otux	taxa names of adjacency x
otuy	taxa names of adjacency y

zdk123/SpiecEasi documentation built on Oct. 20, 2023, 6:49 a.m.