sparcc: sparcc wrapper

Description Usage Arguments See Also

View source: R/spaRcc.R

Description

A reimplementation of SparCC algorithm (Friedman et Alm 2012, PLoS Comp Bio, 2012).

Usage

1
sparcc(data, iter = 20, inner_iter = 10, th = 0.1)

Arguments

data

Community count data matrix

iter

Number of iterations in the outer loop

inner_iter

Number of iterations in the inner loop

th

absolute value of correlations below this threshold are considered zero by the inner SparCC loop.

See Also

sparccboot


zdk123/SpiecEasi documentation built on Oct. 1, 2018, 2:12 p.m.