as.PEM: Convert defined subject to position energy matrix
In zeropin/TFCookbook: Analyzing protein-DNA interactions data in principled way
as.PEM R Documentation
Convert defined subject to position energy matrix
Description
Convert defined subject to position energy matrix
Derive energy matrix from position-based energy model including parameters like 1CG, 1CT, 2CA, 3CG, etc
Usage
as.PEM(subject, ...)
## S4 method for signature 'matrix'
as.PEM(subject)
## S4 method for signature 'lm'
as.PEM(subject)
## S4 method for signature 'elnet'
as.PEM(subject)
as.PEM(subject, ...)
Methods (by class)
-
as.PEM(matrix): PFM
-
as.PEM(lm): energy model
-
as.PEM(elnet): energy model
zeropin/TFCookbook documentation built on July 8, 2023, 2:59 p.m.
R Package Documentation
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| as.PEM | R Documentation |
Convert defined subject to position energy matrix
Description
Convert defined subject to position energy matrix
Derive energy matrix from position-based energy model including parameters like 1CG, 1CT, 2CA, 3CG, etc
Usage
as.PEM(subject, ...)
## S4 method for signature 'matrix'
as.PEM(subject)
## S4 method for signature 'lm'
as.PEM(subject)
## S4 method for signature 'elnet'
as.PEM(subject)
as.PEM(subject, ...)
Methods (by class)
-
as.PEM(matrix): PFM -
as.PEM(lm): energy model -
as.PEM(elnet): energy model
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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