Files in zeropin/TFCookbook
Analyzing protein-DNA interactions data in principled way

.Rbuildignore
.gitignore
CTCF-recognition-model.gif
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R R/fit_models.R R/matchPEM.R R/matrix_functions.R R/plot_functions.R R/utility_functions.R README.md
TFCookbook.Rproj
data/CTCF.rda
data/HoxB13.RData
data/ZFP57.rda
man/SeqToByte.Rd man/SeqToMethylByte.Rd man/addAnchorMatrix.Rd man/as.Coefficients.Rd man/as.PEM.Rd man/buildEnergyModel.Rd man/buildMethylationModel.Rd man/composeMotif.Rd man/countMismatch.Rd man/decomposeMotif.Rd man/getSeqFromUCSC.Rd man/highlightMismatch.Rd man/kmer.Rd man/matchPEM.Rd man/plotEnergyLogo.Rd man/predictEnergy.Rd man/predictEnergyMW.Rd man/reverseComplement.Rd man/selectVariants.Rd
src/.gitignore
src/MOODS/match_types.cpp
src/MOODS/match_types.h
src/MOODS/moods.h
src/MOODS/moods_misc.cpp
src/MOODS/moods_misc.h
src/MOODS/moods_parsers.cpp
src/MOODS/moods_parsers.h
src/MOODS/moods_scan.cpp
src/MOODS/moods_scan.h
src/MOODS/moods_tools.cpp
src/MOODS/moods_tools.h
src/MOODS/motif.h
src/MOODS/motif_0.cpp
src/MOODS/motif_h.cpp
src/MOODS/scanner.cpp
src/MOODS/scanner.h
src/Makevars
src/RcppExports.cpp
src/r_interface.cpp
vignettes/4L+1 motif.svg
vignettes/CTCF Analysis.Rmd
vignettes/CTCF Analysis.nb.html
vignettes/CTCF libraries design.ai
vignettes/CTCF libraries design.png
vignettes/CTCF-Analysis(1).pdf
vignettes/CTCF-Analysis.docx
vignettes/CTCF-Analysis.log
vignettes/CTCF-Analysis.pdf
vignettes/CTCF-Analysis.tex
vignettes/Figure 1.ai
vignettes/Figure 1.png
vignettes/HoxB13 libraries design.ai
vignettes/HoxB13 Analysis.Rmd
vignettes/HoxB13-Analysis.docx
vignettes/HoxB13-Analysis.pdf
vignettes/HoxB13_libraries_design.png
vignettes/Model 4Lp1 comparison.svg
vignettes/Pairwise comparison.svg
vignettes/Regular motif.svg
vignettes/Regular motif_2.eps
vignettes/Separate regressions motif.svg
vignettes/ZFP57 Analysis.Rmd
vignettes/ZFP57 Analysis.nb.html
zeropin/TFCookbook documentation built on July 8, 2023, 2:59 p.m.