predictEnergy: Predict the binding energy of input sequences based on energy...

In zeropin/TFCookbook: Analyzing protein-DNA interactions data in principled way

Predict the binding energy of input sequences based on energy model

Description

Predict the binding energy of input sequences based on energy model

Usage

predictEnergy(sequences, model, ...)

## S4 method for signature 'character,lm'
predictEnergy(sequences, model)

## S4 method for signature 'character,matrix'
predictEnergy(sequences, model)

Arguments

sequences	Input sequences
model	Linear model containing position-based energy coefficients, e.g., 1CA, 1CG, 1CT, 2CA, etc.

Value

Predicted binding energy values of sequences based on model or Position energy matrix (PEM)

Methods (by class)

• predictEnergy(sequences = character, model = lm): Sequences/EnergyModel

• predictEnergy(sequences = character, model = matrix): Sequences/PEM

Examples

predictEnergy(sequences, model)

zeropin/TFCookbook documentation built on July 8, 2023, 2:59 p.m.