buildEnergyModel: Build energy model based on Sequence-Energy relationship

In zeropin/TFCookbook: Analyzing protein-DNA interactions data in principled way

Build energy model based on Sequence-Energy relationship

Description

Build energy model based on Sequence-Energy relationship

Usage

buildEnergyModel(
  data,
  encoding = "3L+1",
  method = c("linear", "ridge", "lasso"),
  lambda
)

Arguments

data	Data frame containing at least two variables – Sequence and Energy
encoding	The encoding scheme used to build model, including 3L+1, 4L+1, 5L+1.
type	The encoding scheme used to build model, including 3L+1, 4L+1, 5L+1.

Value

Linear model containing position-based energy coefficients, e.g., 1CA, 1CG, 1CT, 2CA, etc.

Examples

buildEnergyModel(data)

zeropin/TFCookbook documentation built on July 8, 2023, 2:59 p.m.