predictEnergyMW: Predict the binding energy of input sequences based on energy...

In zeropin/TFCookbook: Analyzing protein-DNA interactions data in principled way

Predict the binding energy of input sequences based on energy model including methylation parameters

Description

Predict the binding energy of input sequences based on energy model including methylation parameters

Usage

predictEnergyMW(sequences, model, encoding = "4L+1")

Arguments

sequences	Input sequences, including M and W as methylated cytosines at upper and lower strands respectively
model	Linear model containing position-based energy coefficients, e.g., 1CA, 1CG, 1CT, 1MW, 2CA, etc.
encoding	Encoding scheme. By default 4L+1

Value

Predicted binding energy values of sequences based on model

Examples

predictEnergyMW(sequences, model, encoding = "4L+1")

zeropin/TFCookbook documentation built on July 8, 2023, 2:59 p.m.