CC_GenePrefetch: Prefetch cycle gene

In zh542370159/SCP: Single Cell Pipeline

Prefetch cycle gene

Description

Based on the human cell cycle genes, the cell cycle genes of the corresponding species were captured by homologous gene conversion.

Usage

CC_GenePrefetch(
  species = "Homo_sapiens",
  Ensembl_version = 103,
  mirror = NULL,
  max_tries = 5,
  use_cached_gene = TRUE
)

Arguments

species	Latin names for animals,i.e., "Homo_sapiens", "Mus_musculus"
Ensembl_version	Ensembl database version. If NULL, use the current release version.
mirror	Specify an Ensembl mirror to connect to. The valid options here are 'www', 'uswest', 'useast', 'asia'.
max_tries	The maximum number of attempts to connect with the BioMart service.
use_cached_gene	Whether to use previously cached cell cycle gene conversion results for the species.

Value

A list of S-phase and G2M-phase genes.

GeneConvert

Examples

ccgenes <- CC_GenePrefetch("Homo_sapiens")
str(ccgenes)
ccgenes <- CC_GenePrefetch("Mus_musculus")
str(ccgenes)

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.