check_R: Check and install R packages
In zh542370159/SCP: Single Cell Pipeline

check_R

R Documentation

Check and install R packages

Description

Check and install R packages

Usage

check_R(
  packages,
  install_methods = c("BiocManager::install", "install.packages",
    "devtools::install_github"),
  lib = .libPaths()[1],
  force = FALSE
)

Arguments

`packages`	Package to be installed. Package source can be CRAN, Bioconductor or Github, e.g. scmap, quadbiolab/simspec. By default, the package name is extracted according to the `packages` parameter.
`install_methods`	Functions used to install R packages.
`lib`	The location of the library directories where to install the packages.
`force`	Whether to force the installation of packages. Default is `FALSE`.