CreateDataFile: CreateDataFile

In zh542370159/SCP: Single Cell Pipeline

CreateDataFile

Description

Creates a data file in HDF5 format from a Seurat object.

Usage

CreateDataFile(
  srt,
  DataFile,
  name = NULL,
  assays = "RNA",
  slots = "data",
  compression_level = 6,
  overwrite = FALSE
)

Arguments

srt	The Seurat object.
DataFile	Path to the output data file. If not provided, the file will be named "Data.hdf5" in the current directory.
name	Name of the dataset. If not provided, the name will default to the Seurat object's project name.
assays	Character vector specifying the assays to include in the data file. Default is "RNA".
slots	Character vector specifying the slots to include in the data file. Default is "data".
compression_level	Compression level for the HDF5 dataset. Default is 6.
overwrite	Logical value indicating whether to overwrite existing data in the data file. Default is FALSE.

See Also

CreateMetaFile PrepareSCExplorer FetchH5 RunSCExplorer

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.