API for zh542370159/SCP
Single Cell Pipeline

Global functions
%>%	Man page
%\|\|%	Man page
.onAttach	Source code
AddModuleScore2	Source code
AnnotateFeatures	Man page Source code
BBKNN_integrate	Man page Source code
Blend2Color	Source code
BlendRGBList	Source code
CC_GenePrefetch	Man page Source code
CSS_integrate	Man page Source code
CellCorHeatmap	Man page
CellDensityPlot	Man page
CellDimPlot	Man page Source code
CellDimPlot3D	Man page Source code
CellScoring	Man page Source code
CellStatPlot	Man page
ComBat_integrate	Man page Source code
Conos_integrate	Man page Source code
CreateDataFile	Man page Source code
CreateMetaFile	Man page Source code
CreateSeuratObject2	Source code
DefaultReduction	Man page Source code
DynamicHeatmap	Man page
DynamicPlot	Man page
EnrichmentPlot	Man page
Env_requirements	Man page Source code
ExpressionStatPlot	Source code
FeatureCorPlot	Man page
FeatureDimPlot	Man page Source code
FeatureDimPlot3D	Man page Source code
FeatureHeatmap	Man page
FeatureStatPlot	Man page Source code
FetchH5	Man page Source code
FindConservedMarkers2	Source code
FindExpressedMarkers	Source code
FoldChange.default	Source code
GSEAPlot	Man page
GeneConvert	Man page Source code
GraphPlot	Man page
GroupHeatmap	Man page
Harmony_integrate	Man page Source code
Integration_SCP	Man page Source code
LIGER_integrate	Man page Source code
LengthCheck	Source code
LineagePlot	Man page
ListDB	Man page Source code
MNN_integrate	Man page Source code
PAGAPlot	Man page
PerformDE	Source code
PrepareDB	Man page Source code
PrepareEnv	Man page Source code
PrepareSCExplorer	Man page Source code
ProjectionPlot	Man page
RGBA2RGB	Source code
RecoverCounts	Man page Source code
RenameClusters	Man page Source code
RenameFeatures	Man page Source code
RunCSSMap	Man page Source code
RunCellQC	Man page Source code
RunCellRank	Source code
RunDEtest	Man page Source code
RunDM	Man page Source code
RunDM.Seurat	Man page Source code
RunDM.default	Man page Source code
RunDimReduction	Man page Source code
RunDoubletCalling	Man page Source code
RunDynamicEnrichment	Man page Source code
RunDynamicFeatures	Man page Source code
RunEnrichment	Man page Source code
RunFR	Man page Source code
RunFR.Seurat	Man page Source code
RunFR.default	Man page Source code
RunGLMPCA	Man page Source code
RunGLMPCA.Assay	Man page Source code
RunGLMPCA.Seurat	Man page Source code
RunGLMPCA.default	Man page Source code
RunGSEA	Man page Source code
RunHarmony2	Man page Source code
RunHarmony2.Seurat	Man page Source code
RunKNNMap	Man page Source code
RunKNNPredict	Man page Source code
RunLargeVis	Man page Source code
RunLargeVis.Seurat	Man page Source code
RunLargeVis.default	Man page Source code
RunMDS	Man page Source code
RunMDS.Assay	Man page Source code
RunMDS.Seurat	Man page Source code
RunMDS.default	Man page Source code
RunMonocle2	Man page Source code
RunMonocle3	Man page Source code
RunNMF	Man page Source code
RunNMF.Assay	Man page Source code
RunNMF.Seurat	Man page Source code
RunNMF.default	Man page Source code
RunPAGA	Man page Source code
RunPCAMap	Man page Source code
RunPHATE	Man page Source code
RunPHATE.Seurat	Man page Source code
RunPHATE.default	Man page Source code
RunPaCMAP	Man page Source code
RunPaCMAP.Seurat	Man page Source code
RunPaCMAP.default	Man page Source code
RunPalantir	Man page Source code
RunSCExplorer	Man page Source code
RunSCVELO	Man page Source code
RunScmap	Man page Source code
RunSeuratMap	Man page Source code
RunSingleR	Man page Source code
RunSlingshot	Man page Source code
RunSymphonyMap	Man page Source code
RunTriMap	Man page Source code
RunTriMap.Seurat	Man page Source code
RunTriMap.default	Man page Source code
RunUMAP2	Man page Source code
RunUMAP2.Seurat	Man page Source code
RunUMAP2.default	Man page Source code
RunWOT	Man page Source code
Scanorama_integrate	Man page Source code
Seurat_integrate	Man page Source code
SrtAppend	Man page Source code
SrtReorder	Man page Source code
Standard_SCP	Man page Source code
StatPlot	Man page
Uncorrected_integrate	Man page Source code
VelocityPlot	Man page
VolcanoPlot	Man page
WilcoxDETest	Source code
adata_to_srt	Man page Source code
adjcolors	Man page Source code
arrow	Man page
asMatrix	Source code
as_matrix	Man page Source code
blendcolors	Man page Source code
buildReferenceFromSeurat	Source code
capitalize	Man page Source code
check_DataType	Man page Source code
check_Python	Man page Source code
check_R	Man page Source code
check_python_element	Source code
check_srtList	Man page Source code
check_srtMerge	Man page Source code
col2hex	Source code
compute_velocity_on_grid	Man page
conda_install	Man page Source code
conda_python	Man page Source code
db_DoubletDetection	Man page Source code
db_Scrublet	Man page Source code
db_scDblFinder	Man page Source code
db_scds	Man page Source code
download	Man page Source code
drop_data	Man page Source code
drop_data.default	Man page Source code
drop_data.ggplot	Man page Source code
drop_data.patchwork	Man page Source code
env_exist	Man page Source code
exist_Python_pkgs	Man page Source code
extract_ddrtree_ordering	Source code
fastMNN_integrate	Man page Source code
find_conda	Man page Source code
find_default_space	Source code
geom_alluvial	Man page
geom_alluvial_label	Man page
geom_alluvial_text	Man page
geom_sankey	Man page
geom_sankey_bump	Man page
geom_sankey_label	Man page
geom_sankey_text	Man page
get_envname	Source code
get_vars	Man page Source code
gpar	Man page
ifnb_sub	Man page
installed_Python_pkgs	Man page Source code
invoke	Man page Source code
isOutlier	Man page Source code
iterchunks	Man page Source code
kegg_get	Source code
lifemap_cell	Man page
lifemap_compartment	Man page
lifemap_organ	Man page
make_long	Man page Source code
mapQuery	Source code
maxDepth	Source code
maximump	Source code
meanp	Source code
metap	Source code
minimump	Source code
orderCells	Source code
palette_list	Man page
palette_scp	Man page Source code
panc8_sub	Man page
pancreas_sub	Man page
panel_fix	Man page Source code
panel_fix_overall	Man page Source code
prepare_params	Source code
project2MST	Source code
py_to_r_auto	Source code
reexports	Man page
ref_scHCL	Man page
ref_scMCA	Man page
ref_scZCL	Man page
rescale	Source code
run_Python	Source code
scVI_integrate	Man page Source code
searchDatasets	Source code
segementsDf	Man page
show_palettes	Man page Source code
sigmoid	Source code
slim_data	Man page Source code
slim_data.default	Source code
slim_data.ggplot	Man page Source code
slim_data.patchwork	Man page Source code
srt_to_adata	Man page Source code
str_wrap	Source code
sump	Source code
theme_alluvial	Man page Source code
theme_blank	Man page Source code
theme_sankey	Man page Source code
theme_sankey_bump	Man page Source code
theme_scp	Man page Source code
tochunks	Man page Source code
try_get	Man page Source code
unit	Man page
unnest	Man page Source code
votep	Source code
wilkinsonp	Source code
words_excluded	Man page
zero_range	Source code