ifnb_sub: A subsetted version of 'ifnb' datasets
In zh542370159/SCP: Single Cell Pipeline

ifnb_sub

R Documentation

A subsetted version of 'ifnb' datasets

Description

Human PBMC control/IFNB-stimulated dataset

Format

A Seurat object.

Source

https://www.nature.com/articles/nbt.4042

Examples

## Not run: 
if (interactive()) {
  if (!require("SeuratData", quietly = TRUE)) {
    devtools::install_github("satijalab/seurat-data")
  }
  library(SeuratData)
  library(Seurat)
  suppressWarnings(InstallData("ifnb"))
  data("ifnb")
  set.seed(11)
  cells_sub <- unlist(lapply(split(colnames(ifnb), ifnb$stim), function(x) sample(x, size = 1000)))
  ifnb_sub <- subset(ifnb, cells = cells_sub)
  ifnb_sub <- ifnb_sub[rowSums(ifnb_sub@assays$RNA@counts) > 0, ]
  ifnb_sub <- UpdateSeuratObject(ifnb_sub)
  # usethis::use_data(ifnb_sub, compress = "xz")
}

## End(Not run)

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.