check_Python: Check and install python packages

In zh542370159/SCP: Single Cell Pipeline

Check and install python packages

Description

Check and install python packages

Usage

check_Python(
  packages,
  envname = NULL,
  conda = "auto",
  force = FALSE,
  pip = TRUE,
  pip_options = character(),
  ...
)

Arguments

packages	A character vector, indicating package names which should be installed or removed. Use ⁠<package>==<version>⁠ to request the installation of a specific version of a package.
envname	The name of a conda environment.
conda	The path to a conda executable. Use "auto" to allow SCP to automatically find an appropriate conda binary.
force	Whether to force package installation. Default is FALSE.
pip	Whether to use pip for package installation. By default, packages are installed from the active conda channels.
pip_options	An optional character vector of additional command line arguments to be passed to pip. Only relevant when pip = TRUE.
...	Other arguments passed to conda_install

Examples

check_Python(packages = c("bbknn", "scanorama"))
## Not run: 
check_Python(packages = "scvi-tools==0.20.0", envname = "SCP_env", pip_options = "-i https://pypi.tuna.tsinghua.edu.cn/simple")

## End(Not run)

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.