check_DataType: Check and report the type of data

In zh542370159/SCP: Single Cell Pipeline

Check and report the type of data

Description

This function checks the type of data and returns a string indicating the type of data. It checks for the presence of infinite values, negative values, and whether the values are floats or integers.

Usage

check_DataType(srt, data = NULL, slot = "data", assay = NULL)

Arguments

srt	An object of class 'Seurat'.
data	The input data. If not provided, it will be extracted from the the 'srt' object.
slot	The slot in the 'srt' object from which to extract the data. Default is "data".
assay	The assay to extract the data from. If not provided, the default assay will be used.

Value

A string indicating the type of data. Possible values are: "raw_counts", "log_normalized_counts", "raw_normalized_counts", or "unknown".

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.