SrtReorder: Reorder idents by the gene expression

In zh542370159/SCP: Single Cell Pipeline

Reorder idents by the gene expression

Description

Reorder idents by the gene expression

Usage

SrtReorder(
  srt,
  features = NULL,
  reorder_by = NULL,
  slot = "data",
  assay = NULL,
  log = TRUE,
  distance_metric = "euclidean"
)

Arguments

srt	A Seurat object.
features	Features used to reorder idents.
reorder_by	Reorder groups instead of idents.
slot	Specific slot to get data from.
assay	Specific assay to get data from.
log	Whether log1p transformation needs to be applied. Default is TRUE.
distance_metric	Metric to compute distance. Default is "euclidean".

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.