ref_scHCL: Reference datasets for cell type annotation in single-cell...

In zh542370159/SCP: Single Cell Pipeline

Reference datasets for cell type annotation in single-cell RNA data

Description

Reference datasets for cell type annotation in single-cell RNA data

Usage

ref_scHCL

ref_scMCA

ref_scZCL

Source

https://github.com/ggjlab/scHCL https://github.com/ggjlab/scMCA https://github.com/ggjlab/scZCL

Examples

## Not run: 
if (interactive()) {
  check_R(c("ggjlab/scZCL", "ggjlab/scHCL", "ggjlab/scMCA"))
  ref_scHCL <- Seurat::NormalizeData(scHCL::ref.expr)
  ref_scMCA <- Seurat::NormalizeData(scMCA::ref.expr)
  ref_scZCL <- Seurat::NormalizeData(scZCL::ref.expr)
  Encoding(colnames(ref_scHCL)) <- "latin1"
  colnames(ref_scHCL) <- iconv(colnames(ref_scHCL), "latin1", "UTF-8")
  Encoding(colnames(ref_scMCA)) <- "latin1"
  colnames(ref_scMCA) <- iconv(colnames(ref_scMCA), "latin1", "UTF-8")
  Encoding(colnames(ref_scZCL)) <- "latin1"
  colnames(ref_scZCL) <- iconv(colnames(ref_scZCL), "latin1", "UTF-8")
  # usethis::use_data(ref_scHCL, compress = "xz")
  # usethis::use_data(ref_scMCA, compress = "xz")
  # usethis::use_data(ref_scZCL, compress = "xz")
}

## End(Not run)

zh542370159/SCP documentation built on Nov. 22, 2023, 2:34 a.m.