BRCA_genes: BRCA genes

Description Format Details References

Description

BRCA genes

Format

BRCA_genes: A SummarizedExperiment object with 4819 BRCA related genes (including lncRNAs and mRNAs).

Details

The BRCA related lncRNAs are from LncRNADisease v2.0, Lnc2Cancer v2.0 and MNDR v2.0. The BRCA related mRNAs are from DisGeNET v5.0 and COSMIC v86.

References

Bao Z, Yang Z, Huang Z, Zhou Y, Cui Q, Dong D. (2019) "LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases". Nucleic Acids Res., 47(D1):D1034-D1037.

Cui T, Zhang L, Huang Y, Yi Y, Tan P, Zhao Y, Hu Y, Xu L, Li E, Wang D. (2018) "MNDR v2.0: an updated resource of ncRNA-disease associa-tions in mammals". Nucleic Acids Res., 46, D371-D374.

Gao Y, Wang P, Wang Y, Ma X, Zhi H, Zhou D, Li X, Fang Y, Shen W, Xu Y, Shang S, Wang L, Wang L, Ning S, Li X. (2019) "Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers". Nucleic Acids Res., 47, D1028-D1033.

Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L, Stefancsik R, Harsha B, Kok CY, Jia M, Jubb H, Sondka Z, Thompson S, De T, Campbell PJ. (2017) "COSMIC: somatic cancer genetics at high-resolution". Nucleic Acids Res., 45, D777-D783

Pinero J, Bravo A, Queralt-Rosinach N, Gutierrez-Sacristan A, Deu-Pons J, Centeno E, Garcia-Garcia J, Sanz F, Furlong LI. (2017) "DisGeNET: a comprehensive platform integrating infor-mation on human disease-associated genes and variants". Nucleic Acids Res., 45, D833-D839.


zhangjunpeng411/miRSM documentation built on Nov. 28, 2020, 7 a.m.