BRCA_genes: BRCA genes
In zhangjunpeng411/miRSM: Inferring miRNA sponge modules in heterogeneous data
BRCA_genes R Documentation
BRCA genes
Description
BRCA genes
Format
BRCA_genes: A SummarizedExperiment object with
4819 BRCA related genes (including lncRNAs and mRNAs).
Details
The BRCA related lncRNAs are from LncRNADisease v2.0, Lnc2Cancer v2.0
and MNDR v2.0. The BRCA related mRNAs are from DisGeNET v5.0 and COSMIC v86.
References
Bao Z, Yang Z, Huang Z, Zhou Y, Cui Q, Dong D. (2019)
"LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases".
Nucleic Acids Res., 47(D1):D1034-D1037.
Cui T, Zhang L, Huang Y, Yi Y, Tan P, Zhao Y, Hu Y, Xu L, Li E, Wang D.
(2018) "MNDR v2.0: an updated resource of ncRNA-disease
associa-tions in mammals". Nucleic Acids Res., 46, D371-D374.
Gao Y, Wang P, Wang Y, Ma X, Zhi H, Zhou D, Li X, Fang Y, Shen W, Xu Y,
Shang S, Wang L, Wang L, Ning S, Li X. (2019) "Lnc2Cancer v2.0: updated database of experimentally
supported long non-coding RNAs in human cancers". Nucleic Acids Res., 47, D1028-D1033.
Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG,
Ward S, Dawson E, Ponting L, Stefancsik R, Harsha B, Kok CY, Jia M, Jubb H, Sondka Z,
Thompson S, De T, Campbell PJ. (2017) "COSMIC: somatic cancer genetics at
high-resolution". Nucleic Acids Res., 45, D777-D783
Pinero J, Bravo A, Queralt-Rosinach N, Gutierrez-Sacristan A, Deu-Pons J,
Centeno E, Garcia-Garcia J, Sanz F, Furlong LI.
(2017) "DisGeNET: a comprehensive platform integrating
infor-mation on human disease-associated genes and variants".
Nucleic Acids Res., 45, D833-D839.
zhangjunpeng411/miRSM documentation built on Sept. 23, 2024, 4:37 a.m.
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| BRCA_genes | R Documentation |
BRCA genes
Description
BRCA genes
Format
BRCA_genes: A SummarizedExperiment object with 4819 BRCA related genes (including lncRNAs and mRNAs).
Details
The BRCA related lncRNAs are from LncRNADisease v2.0, Lnc2Cancer v2.0 and MNDR v2.0. The BRCA related mRNAs are from DisGeNET v5.0 and COSMIC v86.
References
Bao Z, Yang Z, Huang Z, Zhou Y, Cui Q, Dong D. (2019) "LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases". Nucleic Acids Res., 47(D1):D1034-D1037.
Cui T, Zhang L, Huang Y, Yi Y, Tan P, Zhao Y, Hu Y, Xu L, Li E, Wang D. (2018) "MNDR v2.0: an updated resource of ncRNA-disease associa-tions in mammals". Nucleic Acids Res., 46, D371-D374.
Gao Y, Wang P, Wang Y, Ma X, Zhi H, Zhou D, Li X, Fang Y, Shen W, Xu Y, Shang S, Wang L, Wang L, Ning S, Li X. (2019) "Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers". Nucleic Acids Res., 47, D1028-D1033.
Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L, Stefancsik R, Harsha B, Kok CY, Jia M, Jubb H, Sondka Z, Thompson S, De T, Campbell PJ. (2017) "COSMIC: somatic cancer genetics at high-resolution". Nucleic Acids Res., 45, D777-D783
Pinero J, Bravo A, Queralt-Rosinach N, Gutierrez-Sacristan A, Deu-Pons J, Centeno E, Garcia-Garcia J, Sanz F, Furlong LI. (2017) "DisGeNET: a comprehensive platform integrating infor-mation on human disease-associated genes and variants". Nucleic Acids Res., 45, D833-D839.
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