miRTarget: miRNA-target ineractions

Description Format Details References

Description

miRNA-target ineractions

Format

miRTarget: A SummarizedExperiment object with 29901 miRNA-target interactions.

Details

The miRNA-target binding information is from miRTarBase v7.0 (http://mirtarbase.mbc.nctu.edu.tw/php/index.php), and LncBase v2.0 (http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=lncbasev2/index). Among 226 miRNAs, 305 lncRNAs and 500 mRNAs which are differentially expressed, we obtain 29901 miRNA-target interactions (including miRNA-lncRNA and miRNA-mRNA interactions).

References

Hastie T, Tibshirani R, Narasimhan B, Chu G. impute: Imputation for microarray data. R package version 1.54.0. doi: 10.18129/B9.bioc.impute.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015; 43(7):e47.


zhangjunpeng411/miRSM documentation built on Nov. 28, 2020, 7 a.m.