miRTarget: miRNA-target ineractions
In zhangjunpeng411/miRSM: Inferring miRNA sponge modules in heterogeneous data
miRTarget R Documentation
miRNA-target ineractions
Description
miRNA-target ineractions
Format
miRTarget: A SummarizedExperiment object with
29901 miRNA-target interactions.
Details
The miRNA-target binding information is
from miRTarBase v8.0 (http://mirtarbase.mbc.nctu.edu.tw/php/index.php),
and LncBase v2.0
(http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=lncbasev2/index).
Among 226 miRNAs, 305 lncRNAs and 500 mRNAs
which are differentially expressed, we obtain 29901 miRNA-target
interactions (including miRNA-lncRNA and miRNA-mRNA interactions).
References
Hastie T, Tibshirani R, Narasimhan B, Chu G.
impute: Imputation for microarray data.
R package version 1.54.0. doi: 10.18129/B9.bioc.impute.
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW,
Shi W, et al. limma powers differential expression
analyses for RNA-sequencing and microarray studies.
Nucleic Acids Res. 2015; 43(7):e47.
zhangjunpeng411/miRSM documentation built on Sept. 23, 2024, 4:37 a.m.
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| miRTarget | R Documentation |
miRNA-target ineractions
Description
miRNA-target ineractions
Format
miRTarget: A SummarizedExperiment object with 29901 miRNA-target interactions.
Details
The miRNA-target binding information is from miRTarBase v8.0 (http://mirtarbase.mbc.nctu.edu.tw/php/index.php), and LncBase v2.0 (http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=lncbasev2/index). Among 226 miRNAs, 305 lncRNAs and 500 mRNAs which are differentially expressed, we obtain 29901 miRNA-target interactions (including miRNA-lncRNA and miRNA-mRNA interactions).
References
Hastie T, Tibshirani R, Narasimhan B, Chu G. impute: Imputation for microarray data. R package version 1.54.0. doi: 10.18129/B9.bioc.impute.
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015; 43(7):e47.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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